Geant4 11.1.1
Toolkit for the simulation of the passage of particles through matter
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Public Member Functions | List of all members
G4DNACrossSectionDataSet Class Reference

#include <G4DNACrossSectionDataSet.hh>

+ Inheritance diagram for G4DNACrossSectionDataSet:

Public Member Functions

 G4DNACrossSectionDataSet (G4VDataSetAlgorithm *algo, G4double xUnit=CLHEP::MeV, G4double dataUnit=CLHEP::barn)
 
virtual ~G4DNACrossSectionDataSet ()
 
virtual G4double FindValue (G4double e, G4int componentId=0) const
 
virtual void PrintData (void) const
 
virtual const G4VEMDataSet * GetComponent (G4int componentId) const
 
virtual void AddComponent (G4VEMDataSet *dataSet)
 
virtual size_t NumberOfComponents (void) const
 
virtual const G4DataVector & GetEnergies (G4int componentId) const
 
virtual const G4DataVector & GetData (G4int componentId) const
 
virtual const G4DataVector & GetLogEnergies (G4int componentId) const
 
virtual const G4DataVector & GetLogData (G4int componentId) const
 
virtual void SetEnergiesData (G4DataVector *x, G4DataVector *values, G4int componentId)
 
virtual void SetLogEnergiesData (G4DataVector *x, G4DataVector *values, G4DataVector *log_x, G4DataVector *log_values, G4int componentId)
 
virtual G4bool LoadData (const G4String &argFileName)
 
virtual G4bool LoadNonLogData (const G4String &argFileName)
 
virtual G4bool SaveData (const G4String &argFileName) const
 
virtual G4double RandomSelect (G4int) const
 
- Public Member Functions inherited from G4VEMDataSet
 G4VEMDataSet ()
 
virtual ~G4VEMDataSet ()
 
virtual G4double FindValue (G4double x, G4int componentId=0) const =0
 
virtual void PrintData (void) const =0
 
virtual const G4VEMDataSet * GetComponent (G4int componentId) const =0
 
virtual void AddComponent (G4VEMDataSet *dataSet)=0
 
virtual size_t NumberOfComponents (void) const =0
 
virtual const G4DataVector & GetEnergies (G4int componentId) const =0
 
virtual const G4DataVector & GetData (G4int componentId) const =0
 
virtual const G4DataVector & GetLogEnergies (G4int componentId) const =0
 
virtual const G4DataVector & GetLogData (G4int componentId) const =0
 
virtual void SetEnergiesData (G4DataVector *x, G4DataVector *data, G4int component=0)=0
 
virtual void SetLogEnergiesData (G4DataVector *x, G4DataVector *data, G4DataVector *Log_x, G4DataVector *Log_data, G4int component=0)=0
 
virtual G4bool LoadData (const G4String &fileName)=0
 
virtual G4bool LoadNonLogData (const G4String &fileName)=0
 
virtual G4bool SaveData (const G4String &fileName) const =0
 
virtual G4double RandomSelect (G4int componentId=0) const =0
 
 G4VEMDataSet (const G4VEMDataSet &copy)=delete
 
G4VEMDataSet & operator= (const G4VEMDataSet &right)=delete
 

Detailed Description

Definition at line 54 of file G4DNACrossSectionDataSet.hh.

Constructor & Destructor Documentation

◆ G4DNACrossSectionDataSet()

G4DNACrossSectionDataSet::G4DNACrossSectionDataSet ( G4VDataSetAlgorithm *  algo,
G4double  xUnit = CLHEP::MeV,
G4double  dataUnit = CLHEP::barn 
)

Definition at line 64 of file G4DNACrossSectionDataSet.cc.

67 :
68 algorithm(argAlgorithm), unitEnergies(argUnitEnergies), unitData(argUnitData)
69{
70 z = 0;
71
72}

Referenced by G4DNACrossSectionDataSet().

◆ ~G4DNACrossSectionDataSet()

G4DNACrossSectionDataSet::~G4DNACrossSectionDataSet ( )
virtual

Definition at line 75 of file G4DNACrossSectionDataSet.cc.

76{
77 CleanUpComponents();
78
79 if (algorithm)
80 delete algorithm;
81}

Member Function Documentation

◆ AddComponent()

virtual void G4DNACrossSectionDataSet::AddComponent ( G4VEMDataSet *  dataSet)
inlinevirtual

Implements G4VEMDataSet.

Definition at line 71 of file G4DNACrossSectionDataSet.hh.

72 { components.push_back(dataSet); }

Referenced by LoadData(), and LoadNonLogData().

◆ FindValue()

G4double G4DNACrossSectionDataSet::FindValue ( G4double  e,
G4int  componentId = 0 
) const
virtual

Implements G4VEMDataSet.

Definition at line 483 of file G4DNACrossSectionDataSet.cc.

484{
485 // Returns the sum over the shells corresponding to e
486 G4double value = 0.;
487
488 std::vector<G4VEMDataSet *>::const_iterator i(components.begin());
489 std::vector<G4VEMDataSet *>::const_iterator end(components.end());
490
491 while (i!=end)
492 {
493 value+=(*i)->FindValue(argEnergy);
494 i++;
495 }
496
497 return value;
498}
G4double
double G4double
Definition: G4Types.hh:83

Referenced by G4DNABornExcitationModel1::CrossSectionPerVolume(), G4DNABornIonisationModel1::CrossSectionPerVolume(), G4DNABornIonisationModel2::CrossSectionPerVolume(), G4DNAChampionElasticModel::CrossSectionPerVolume(), G4DNACPA100ElasticModel::CrossSectionPerVolume(), G4DNACPA100ExcitationModel::CrossSectionPerVolume(), G4DNACPA100IonisationModel::CrossSectionPerVolume(), G4DNADiracRMatrixExcitationModel::CrossSectionPerVolume(), G4DNAEmfietzoglouExcitationModel::CrossSectionPerVolume(), G4DNAEmfietzoglouIonisationModel::CrossSectionPerVolume(), G4DNAIonElasticModel::CrossSectionPerVolume(), G4DNAMeltonAttachmentModel::CrossSectionPerVolume(), G4DNARuddIonisationExtendedModel::CrossSectionPerVolume(), G4DNARuddIonisationModel::CrossSectionPerVolume(), and G4DNAELSEPAElasticModel::CrossSectionPerVolume().

◆ GetComponent()

virtual const G4VEMDataSet * G4DNACrossSectionDataSet::GetComponent ( G4int  componentId) const
inlinevirtual

Implements G4VEMDataSet.

Definition at line 68 of file G4DNACrossSectionDataSet.hh.

69 { return components[componentId]; }

Referenced by GetData(), GetEnergies(), GetLogData(), GetLogEnergies(), G4DNABornExcitationModel1::GetPartialCrossSection(), G4DNABornIonisationModel1::GetPartialCrossSection(), G4DNABornIonisationModel2::GetPartialCrossSection(), PrintData(), G4VDNAModel::RandomSelectShell(), and SaveData().

◆ GetData()

virtual const G4DataVector & G4DNACrossSectionDataSet::GetData ( G4int  componentId) const
inlinevirtual

Implements G4VEMDataSet.

Definition at line 80 of file G4DNACrossSectionDataSet.hh.

81 { return GetComponent(componentId)->GetData(0); }
G4DNACrossSectionDataSet::GetComponent
virtual const G4VEMDataSet * GetComponent(G4int componentId) const
Definition: G4DNACrossSectionDataSet.hh:68
G4VEMDataSet::GetData
virtual const G4DataVector & GetData(G4int componentId) const =0

◆ GetEnergies()

virtual const G4DataVector & G4DNACrossSectionDataSet::GetEnergies ( G4int  componentId) const
inlinevirtual

Implements G4VEMDataSet.

Definition at line 77 of file G4DNACrossSectionDataSet.hh.

78 { return GetComponent(componentId)->GetEnergies(0); }
G4VEMDataSet::GetEnergies
virtual const G4DataVector & GetEnergies(G4int componentId) const =0

Referenced by SaveData().

◆ GetLogData()

virtual const G4DataVector & G4DNACrossSectionDataSet::GetLogData ( G4int  componentId) const
inlinevirtual

Implements G4VEMDataSet.

Definition at line 86 of file G4DNACrossSectionDataSet.hh.

87 { return GetComponent(componentId)->GetLogData(0); }
G4VEMDataSet::GetLogData
virtual const G4DataVector & GetLogData(G4int componentId) const =0

◆ GetLogEnergies()

virtual const G4DataVector & G4DNACrossSectionDataSet::GetLogEnergies ( G4int  componentId) const
inlinevirtual

Implements G4VEMDataSet.

Definition at line 83 of file G4DNACrossSectionDataSet.hh.

84 { return GetComponent(componentId)->GetLogEnergies(0); }
G4VEMDataSet::GetLogEnergies
virtual const G4DataVector & GetLogEnergies(G4int componentId) const =0

◆ LoadData()

G4bool G4DNACrossSectionDataSet::LoadData ( const G4String &  argFileName)
virtual

Implements G4VEMDataSet.

Definition at line 83 of file G4DNACrossSectionDataSet.cc.

84{
85 CleanUpComponents();
86
87 G4String fullFileName(FullFileName(argFileName));
88 std::ifstream in(fullFileName, std::ifstream::binary|std::ifstream::in);
89
90 if (!in.is_open())
91 {
92 G4String message("Data file \"");
93 message+=fullFileName;
94 message+="\" not found";
95 G4Exception("G4DNACrossSectionDataSet::LoadData","em0003",
96 FatalException,message);
97 return false;
98 }
99
100 std::vector<G4DataVector *> columns;
101 std::vector<G4DataVector *> log_columns;
102
103 std::stringstream *stream(new std::stringstream);
104 char c;
105 G4bool comment(false);
106 G4bool space(true);
107 G4bool first(true);
108
109 try
110 {
111 while (!in.eof())
112 {
113 in.get(c);
114
115 switch (c)
116 {
117 case '\r':
118 case '\n':
119 if (!first)
120 {
121 unsigned long i(0);
122 G4double value;
123
124 while (!stream->eof())
125 {
126 (*stream) >> value;
127
128 while (i>=columns.size())
129 {
130 columns.push_back(new G4DataVector);
131 log_columns.push_back(new G4DataVector);
132 }
133
134 columns[i]->push_back(value);
135
136// N. A. Karakatsanis
137// A condition is applied to check if negative or zero values are present in the dataset.
138// If yes, then a near-zero value is applied to allow the computation of the logarithmic value
139// If a value is zero, this simplification is acceptable
140// If a value is negative, then it is not acceptable and the data of the particular column of
141// logarithmic values should not be used by interpolation methods.
142//
143// Therefore, G4LogLogInterpolation and G4LinLogLogInterpolation should not be used if negative values are present.
144// Instead, G4LinInterpolation is safe in every case
145// SemiLogInterpolation is safe only if the energy columns are non-negative
146// G4LinLogInterpolation is safe only if the cross section data columns are non-negative
147
148 if (value <=0.) value = 1e-300;
149 log_columns[i]->push_back(std::log10(value));
150
151 i++;
152 }
153
154 delete stream;
155 stream=new std::stringstream;
156 }
157
158 first=true;
159 comment=false;
160 space=true;
161 break;
162
163 case '#':
164 comment=true;
165 break;
166
167 case '\t':
168 case ' ':
169 space = true;
170 break;
171
172 default:
173 if (comment) { break; }
174 if (space && (!first)) { (*stream) << ' '; }
175
176 first=false;
177 (*stream) << c;
178 space=false;
179 }
180 }
181 }
182 catch(const std::ios::failure &e)
183 {
184 // some implementations of STL could throw a "failture" exception
185 // when read wants read characters after end of file
186 }
187
188 delete stream;
189
190 std::size_t maxI(columns.size());
191
192 if (maxI<2)
193 {
194 G4String message("Data file \"");
195 message+=fullFileName;
196 message+="\" should have at least two columns";
197 G4Exception("G4DNACrossSectionDataSet::LoadData","em0005",
198 FatalException,message);
199 return false;
200 }
201
202 std::size_t i(1);
203 while (i<maxI)
204 {
205 std::size_t maxJ(columns[i]->size());
206
207 if (maxJ!=columns[0]->size())
208 {
209 G4String message("Data file \"");
210 message+=fullFileName;
211 message+="\" has lines with a different number of columns";
212 G4Exception("G4DNACrossSectionDataSet::LoadData","em0005",
213 FatalException,message);
214 return false;
215 }
216
217 std::size_t j(0);
218
219 G4DataVector *argEnergies=new G4DataVector;
220 G4DataVector *argData=new G4DataVector;
221 G4DataVector *argLogEnergies=new G4DataVector;
222 G4DataVector *argLogData=new G4DataVector;
223
224 while(j<maxJ)
225 {
226 argEnergies->push_back(columns[0]->operator[] (j)*GetUnitEnergies());
227 argData->push_back(columns[i]->operator[] (j)*GetUnitData());
228 argLogEnergies->push_back(log_columns[0]->operator[] (j) + std::log10(GetUnitEnergies()));
229 argLogData->push_back(log_columns[i]->operator[] (j) + std::log10(GetUnitData()));
230 j++;
231 }
232
233 AddComponent(new G4EMDataSet(G4int(i-1), argEnergies, argData, argLogEnergies, argLogData, GetAlgorithm()->Clone(), GetUnitEnergies(), GetUnitData()));
234
235 i++;
236 }
237
238 i=maxI;
239 while (i>0)
240 {
241 i--;
242 delete columns[i];
243 delete log_columns[i];
244 }
245
246 return true;
247}
FatalException
@ FatalException
Definition: G4ExceptionSeverity.hh:61
G4Exception
void G4Exception(const char *originOfException, const char *exceptionCode, G4ExceptionSeverity severity, const char *description)
Definition: G4Exception.cc:59
G4bool
bool G4bool
Definition: G4Types.hh:86
G4int
int G4int
Definition: G4Types.hh:85
G4DNACrossSectionDataSet::AddComponent
virtual void AddComponent(G4VEMDataSet *dataSet)
Definition: G4DNACrossSectionDataSet.hh:71

Referenced by G4DNAChampionElasticModel::Initialise(), G4DNACPA100ElasticModel::Initialise(), G4DNAMeltonAttachmentModel::Initialise(), G4DNARuddIonisationExtendedModel::Initialise(), G4DNARuddIonisationModel::Initialise(), G4DNABornExcitationModel1::Initialise(), G4DNABornIonisationModel1::Initialise(), G4DNABornIonisationModel2::Initialise(), G4DNACPA100ExcitationModel::Initialise(), G4DNACPA100IonisationModel::Initialise(), G4DNADiracRMatrixExcitationModel::Initialise(), G4DNAEmfietzoglouExcitationModel::Initialise(), G4DNAEmfietzoglouIonisationModel::Initialise(), G4DNAELSEPAElasticModel::Initialise(), and G4DNAIonElasticModel::Initialise().

◆ LoadNonLogData()

G4bool G4DNACrossSectionDataSet::LoadNonLogData ( const G4String &  argFileName)
virtual

Implements G4VEMDataSet.

Definition at line 250 of file G4DNACrossSectionDataSet.cc.

251{
252 CleanUpComponents();
253
254 G4String fullFileName(FullFileName(argFileName));
255 std::ifstream in(fullFileName, std::ifstream::binary|std::ifstream::in);
256
257 if (!in.is_open())
258 {
259 G4String message("Data file \"");
260 message+=fullFileName;
261 message+="\" not found";
262 G4Exception("G4DNACrossSectionDataSet::LoadData","em0003",
263 FatalException,message);
264 return false;
265 }
266
267 std::vector<G4DataVector *> columns;
268
269 std::stringstream *stream(new std::stringstream);
270 char c;
271 G4bool comment(false);
272 G4bool space(true);
273 G4bool first(true);
274
275 try
276 {
277 while (!in.eof())
278 {
279 in.get(c);
280
281 switch (c)
282 {
283 case '\r':
284 case '\n':
285 if (!first)
286 {
287 unsigned long i(0);
288 G4double value;
289
290 while (!stream->eof())
291 {
292 (*stream) >> value;
293
294 while (i>=columns.size())
295 {
296 columns.push_back(new G4DataVector);
297 }
298
299 columns[i]->push_back(value);
300
301 i++;
302 }
303
304 delete stream;
305 stream=new std::stringstream;
306 }
307
308 first=true;
309 comment=false;
310 space=true;
311 break;
312
313 case '#':
314 comment=true;
315 break;
316
317 case '\t':
318 case ' ':
319 space = true;
320 break;
321
322 default:
323 if (comment) { break; }
324 if (space && (!first)) { (*stream) << ' '; }
325
326 first=false;
327 (*stream) << c;
328 space=false;
329 }
330 }
331 }
332 catch(const std::ios::failure &e)
333 {
334 // some implementations of STL could throw a "failture" exception
335 // when read wants read characters after end of file
336 }
337
338 delete stream;
339
340 std::size_t maxI(columns.size());
341
342 if (maxI<2)
343 {
344 G4String message("Data file \"");
345 message+=fullFileName;
346 message+="\" should have at least two columns";
347 G4Exception("G4DNACrossSectionDataSet::LoadData","em0005",
348 FatalException,message);
349 return false;
350 }
351
352 std::size_t i(1);
353 while (i<maxI)
354 {
355 std::size_t maxJ(columns[i]->size());
356
357 if (maxJ!=columns[0]->size())
358 {
359 G4String message("Data file \"");
360 message+=fullFileName;
361 message+="\" has lines with a different number of columns.";
362 G4Exception("G4DNACrossSectionDataSet::LoadData","em0005",
363 FatalException,message);
364 return false;
365 }
366
367 std::size_t j(0);
368
369 G4DataVector *argEnergies=new G4DataVector;
370 G4DataVector *argData=new G4DataVector;
371
372 while(j<maxJ)
373 {
374 argEnergies->push_back(columns[0]->operator[] (j)*GetUnitEnergies());
375 argData->push_back(columns[i]->operator[] (j)*GetUnitData());
376 j++;
377 }
378
379 AddComponent(new G4EMDataSet(G4int(i-1), argEnergies, argData, GetAlgorithm()->Clone(), GetUnitEnergies(), GetUnitData()));
380
381 i++;
382 }
383
384 i=maxI;
385 while (i>0)
386 {
387 i--;
388 delete columns[i];
389 }
390
391 return true;
392}

◆ NumberOfComponents()

virtual size_t G4DNACrossSectionDataSet::NumberOfComponents ( void  ) const
inlinevirtual

Implements G4VEMDataSet.

Definition at line 74 of file G4DNACrossSectionDataSet.hh.

75 { return components.size(); }

Referenced by G4DNADiracRMatrixExcitationModel::GetExtendedTotalCrossSection(), PrintData(), G4VDNAModel::RandomSelectShell(), and SaveData().

◆ PrintData()

void G4DNACrossSectionDataSet::PrintData ( void  ) const
virtual

Implements G4VEMDataSet.

Definition at line 501 of file G4DNACrossSectionDataSet.cc.

502{
503 const G4int n = (G4int)NumberOfComponents();
504
505 G4cout << "The data set has " << n << " components" << G4endl;
506 G4cout << G4endl;
507
508 G4int i(0);
509
510 while (i<n)
511 {
512 G4cout << "--- Component " << i << " ---" << G4endl;
513 GetComponent(i)->PrintData();
514 ++i;
515 }
516}
G4endl
#define G4endl
Definition: G4ios.hh:57
G4cout
G4GLOB_DLL std::ostream G4cout
G4DNACrossSectionDataSet::NumberOfComponents
virtual size_t NumberOfComponents(void) const
Definition: G4DNACrossSectionDataSet.hh:74
G4VEMDataSet::PrintData
virtual void PrintData(void) const =0

◆ RandomSelect()

virtual G4double G4DNACrossSectionDataSet::RandomSelect ( G4int  ) const
inlinevirtual

Implements G4VEMDataSet.

Definition at line 102 of file G4DNACrossSectionDataSet.hh.

102{ return -1.; };

◆ SaveData()

G4bool G4DNACrossSectionDataSet::SaveData ( const G4String &  argFileName) const
virtual

Implements G4VEMDataSet.

Definition at line 395 of file G4DNACrossSectionDataSet.cc.

396{
397 const std::size_t n(NumberOfComponents());
398
399 if (n==0)
400 {
401 G4Exception("G4DNACrossSectionDataSet::SaveData","em0005",
402 FatalException,"Expected at least one component");
403
404 return false;
405 }
406
407 G4String fullFileName(FullFileName(argFileName));
408 std::ofstream out(fullFileName);
409
410 if (!out.is_open())
411 {
412 G4String message("Cannot open \"");
413 message+=fullFileName;
414 message+="\"";
415 G4Exception("G4DNACrossSectionDataSet::SaveData","em0005",
416 FatalException,message);
417 return false;
418 }
419
420 G4DataVector::const_iterator iEnergies(GetComponent(0)->GetEnergies(0).begin());
421 G4DataVector::const_iterator iEnergiesEnd(GetComponent(0)->GetEnergies(0).end());
422 G4DataVector::const_iterator * iData(new G4DataVector::const_iterator[n]);
423
424 std::size_t k(n);
425
426 while (k>0)
427 {
428 k--;
429 iData[k]=GetComponent((G4int)k)->GetData(0).cbegin();
430 }
431
432 while (iEnergies!=iEnergiesEnd)
433 {
434 out.precision(10);
435 out.width(15);
436 out.setf(std::ofstream::left);
437 out << ((*iEnergies)/GetUnitEnergies());
438
439 k=0;
440
441 while (k<n)
442 {
443 out << ' ';
444 out.precision(10);
445 out.width(15);
446 out.setf(std::ofstream::left);
447 out << ((*(iData[k]))/GetUnitData());
448
449 iData[k]++;
450 k++;
451 }
452
453 out << std::endl;
454
455 iEnergies++;
456 }
457
458 delete[] iData;
459
460 return true;
461}
G4DNACrossSectionDataSet::GetEnergies
virtual const G4DataVector & GetEnergies(G4int componentId) const
Definition: G4DNACrossSectionDataSet.hh:77

◆ SetEnergiesData()

void G4DNACrossSectionDataSet::SetEnergiesData ( G4DataVector *  x,
G4DataVector *  values,
G4int  componentId 
)
virtual

Implements G4VEMDataSet.

Definition at line 519 of file G4DNACrossSectionDataSet.cc.

522{
523 G4VEMDataSet * component(components[argComponentId]);
524
525 if (component)
526 {
527 component->SetEnergiesData(argEnergies, argData, 0);
528 return;
529 }
530
531 std::ostringstream message;
532 message << "Component " << argComponentId << " not found";
533
534 G4Exception("G4DNACrossSectionDataSet::SetEnergiesData","em0005",
535 FatalException,message.str().c_str());
536
537}

◆ SetLogEnergiesData()

void G4DNACrossSectionDataSet::SetLogEnergiesData ( G4DataVector *  x,
G4DataVector *  values,
G4DataVector *  log_x,
G4DataVector *  log_values,
G4int  componentId 
)
virtual

Implements G4VEMDataSet.

Definition at line 540 of file G4DNACrossSectionDataSet.cc.

545{
546 G4VEMDataSet * component(components[argComponentId]);
547
548 if (component)
549 {
550 component->SetLogEnergiesData(argEnergies, argData, argLogEnergies, argLogData, 0);
551 return;
552 }
553
554 std::ostringstream message;
555 message << "Component " << argComponentId << " not found";
556
557 G4Exception("G4DNACrossSectionDataSet::SetLogEnergiesData","em0005",
558 FatalException,message.str().c_str());
559
560}
The documentation for this class was generated from the following files: